vpMatrix_cholesky.cpp

/****************************************************************************
 *
 * ViSP, open source Visual Servoing Platform software.
 * Copyright (C) 2005 - 2019 by Inria. All rights reserved.
 *
 * This software is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 2 of the License, or
 * (at your option) any later version.
 * See the file LICENSE.txt at the root directory of this source
 * distribution for additional information about the GNU GPL.
 *
 * For using ViSP with software that can not be combined with the GNU
 * GPL, please contact Inria about acquiring a ViSP Professional
 * Edition License.
 *
 * See http://visp.inria.fr for more information.
 *
 * This software was developed at:
 * Inria Rennes - Bretagne Atlantique
 * Campus Universitaire de Beaulieu
 * 35042 Rennes Cedex
 * France
 *
 * If you have questions regarding the use of this file, please contact
 * Inria at visp@inria.fr
 *
 * This file is provided AS IS with NO WARRANTY OF ANY KIND, INCLUDING THE
 * WARRANTY OF DESIGN, MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
 *
 * Description:
 * Matrix Cholesky decomposition.
 *
 * Authors:
 * Filip Novotny
 *
 *****************************************************************************/

#include <visp3/core/vpConfig.h>

#include <visp3/core/vpColVector.h>
#include <visp3/core/vpMath.h>
#include <visp3/core/vpMatrix.h>

// Exception
#include <visp3/core/vpException.h>
#include <visp3/core/vpMatrixException.h>

// Debug trace
#include <visp3/core/vpDebug.h>

#if (VISP_HAVE_OPENCV_VERSION >= 0x020101) // Require opencv >= 2.1.1
#include <opencv2/core/core.hpp>
#endif

#ifdef VISP_HAVE_LAPACK
#  ifdef VISP_HAVE_GSL
#    include <gsl/gsl_linalg.h>
#  endif
#  ifdef VISP_HAVE_MKL
#    include <mkl.h>
typedef MKL_INT integer;
#  elif !defined(VISP_HAVE_GSL)
#    ifdef VISP_HAVE_LAPACK_BUILT_IN
typedef long int integer;
#    else
typedef int integer;
#    endif
extern "C" void dpotrf_(char *uplo, integer *n, double *a, integer *lda, integer *info);
extern "C" int dpotri_(char *uplo, integer *n, double *a, integer *lda, integer *info);
#  endif
#endif

vpMatrix vpMatrix::inverseByCholesky() const
{
#if defined(VISP_HAVE_LAPACK)
  return inverseByCholeskyLapack();
#elif (VISP_HAVE_OPENCV_VERSION >= 0x020101)
  return inverseByCholeskyOpenCV();
#else
  throw(vpException(vpException::fatalError, "Cannot inverse matrix by "
                                             "Cholesky. Install Lapack or "
                                             "OpenCV 3rd party"));
#endif
}

#if defined(VISP_HAVE_LAPACK)

vpMatrix vpMatrix::inverseByCholeskyLapack() const
{
#if defined(VISP_HAVE_GSL)
  {
    vpMatrix invA = *this;

    gsl_matrix cholesky;
    cholesky.size1 = rowNum;
    cholesky.size2 = colNum;
    cholesky.tda = cholesky.size2;
    cholesky.data = invA.data;
    cholesky.owner = 0;
    cholesky.block = 0;

#if (GSL_MAJOR_VERSION >= 2 && GSL_MINOR_VERSION >= 3)
    gsl_linalg_cholesky_decomp1(&cholesky);
#else
    gsl_linalg_cholesky_decomp(&cholesky);
#endif
    gsl_linalg_cholesky_invert(&cholesky);
    return invA;
  }
#else
  {
    if (rowNum != colNum) {
      throw(vpMatrixException(vpMatrixException::matrixError, "Cannot inverse a non-square matrix (%ux%u) by Cholesky",
                              rowNum, colNum));
    }

    integer rowNum_ = (integer)this->getRows();
    integer lda = (integer)rowNum_; // lda is the number of rows because we don't use a submatrix
    integer info;

    vpMatrix A = *this;
    dpotrf_((char *)"L", &rowNum_, A.data, &lda, &info);

    if (info != 0)
      throw(vpException(vpException::fatalError, "Cannot inverse by Cholesky with Lapack: error in dpotrf_()"));

    dpotri_((char *)"L", &rowNum_, A.data, &lda, &info);
    if (info != 0) {
      std::cout << "cholesky:dpotri_:error" << std::endl;
      throw vpMatrixException::badValue;
    }

    for (unsigned int i = 0; i < A.getRows(); i++)
      for (unsigned int j = 0; j < A.getCols(); j++)
        if (i > j)
          A[i][j] = A[j][i];

    return A;
  }
#endif
}
#endif

#if (VISP_HAVE_OPENCV_VERSION >= 0x020101)

vpMatrix vpMatrix::inverseByCholeskyOpenCV() const
{
  if (rowNum != colNum) {
    throw(
        vpException(vpException::fatalError, "Cannot inverse a non square matrix (%ux%u) by Cholesky", rowNum, colNum));
  }

  cv::Mat M(rowNum, colNum, CV_64F, this->data);
  cv::Mat Minv = M.inv(cv::DECOMP_CHOLESKY);

  vpMatrix A(rowNum, colNum);
  memcpy(A.data, Minv.data, (size_t)(8 * Minv.rows * Minv.cols));

  return A;
}
#endif